MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.27679275153354704
cnr4.61240063037917
efc0.6112876404085501
fber88.81539154052734
fwhmavg3.8093233333333334
fwhmx3.61508
fwhmy4.02139
fwhmz3.7915
icvscsf0.183950333828091
icvsgm0.48441295085218417
icvswm0.33163671531972483
inumed0.9092984199523926
inurange0.28885177373886095
qi10.0
qi20.002668746301190861
rpvecsf25.266560822559914
rpvegm11.297290909656788
rpvewm18.606533240365877
sizex180
sizey256
sizez256
snrcsf2.4377848434817655
snrgm10.906838623520306
snrtotal11.384162573515283
snrwm20.807864253543777
snrdcsf14.323761035107836
snrdgm28.47606849508182
snrdtotal29.04269328231059
snrdwm44.328250316742114
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.6124260930743262
summarybgmad14.779365539550781
summarybgmean54.825599670410156
summarybgmedian53.46238708496094
summarybgn2775938.0
summarybgp0532.625220489501956
summarybgp9581.82740058898925
summarybgstdv15.254321098327637
summarycsfk-0.26689608294884426
summarycsfmad155.6333770751953
summarycsfmean325.480224609375
summarycsfmedian323.13287353515625
summarycsfn11627.0
summarycsfp05130.61942443847656
summarycsfp95535.0231689453125
summarycsfstdv132.546142578125
summarygmk0.3585480658219229
summarygmmad55.85697555541992
summarygmmean643.4547729492188
summarygmmedian642.3978881835938
summarygmn48154.0
summarygmp05548.7704803466797
summarygmp95743.0559234619141
summarygmstdv58.89802169799805
summarywmk0.9318137706292098
summarywmmad43.12767028808594
summarywmmean997.84912109375
summarywmmedian1000.0107421875
summarywmn191052.0
summarywmp05914.0081695556642
summarywmp951071.9865234375
summarywmstdv48.05914306640625
tpmoverlapcsf0.21052506566047668
tpmoverlapgm0.536909818649292
tpmoverlapwm0.5443926453590393
wm2max0.6609482712100867

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumff750b8c034ee2f21460593990ac893f
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.