MRIQC: individual T1w report

Summary

Subject ID: 034_ExercisePre.
Date and time: 2018-05-06, 23:23.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.27679275153354704
cnr			4.61240063037917
efc			0.6112876404085501
fber			88.81539154052734
fwhm	avg		3.8093233333333334
fwhm	x		3.61508
fwhm	y		4.02139
fwhm	z		3.7915
icvs	csf		0.183950333828091
icvs	gm		0.48441295085218417
icvs	wm		0.33163671531972483
inu	med		0.9092984199523926
inu	range		0.28885177373886095
qi	1		0.0
qi	2		0.002668746301190861
rpve	csf		25.266560822559914
rpve	gm		11.297290909656788
rpve	wm		18.606533240365877
size	x		180
size	y		256
size	z		256
snr	csf		2.4377848434817655
snr	gm		10.906838623520306
snr	total		11.384162573515283
snr	wm		20.807864253543777
snrd	csf		14.323761035107836
snrd	gm		28.47606849508182
snrd	total		29.04269328231059
snrd	wm		44.328250316742114
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.6124260930743262
summary	bg	mad	14.779365539550781
summary	bg	mean	54.825599670410156
summary	bg	median	53.46238708496094
summary	bg	n	2775938.0
summary	bg	p05	32.625220489501956
summary	bg	p95	81.82740058898925
summary	bg	stdv	15.254321098327637
summary	csf	k	-0.26689608294884426
summary	csf	mad	155.6333770751953
summary	csf	mean	325.480224609375
summary	csf	median	323.13287353515625
summary	csf	n	11627.0
summary	csf	p05	130.61942443847656
summary	csf	p95	535.0231689453125
summary	csf	stdv	132.546142578125
summary	gm	k	0.3585480658219229
summary	gm	mad	55.85697555541992
summary	gm	mean	643.4547729492188
summary	gm	median	642.3978881835938
summary	gm	n	48154.0
summary	gm	p05	548.7704803466797
summary	gm	p95	743.0559234619141
summary	gm	stdv	58.89802169799805
summary	wm	k	0.9318137706292098
summary	wm	mad	43.12767028808594
summary	wm	mean	997.84912109375
summary	wm	median	1000.0107421875
summary	wm	n	191052.0
summary	wm	p05	914.0081695556642
summary	wm	p95	1071.9865234375
summary	wm	stdv	48.05914306640625
tpm	overlap	csf	0.21052506566047668
tpm	overlap	gm	0.536909818649292
tpm	overlap	wm	0.5443926453590393
wm2max			0.6609482712100867

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	ff750b8c034ee2f21460593990ac893f
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.